Skywrath Mage
* Due to his low health and armor, Riki can easily kill Skywrath Mage.
* Smoke Screen prevents Skywrath from using all of his abilities, as he does not tend to buy 
Black King Bar.
* However, Skywrath Mage can easily kill Riki if he manages to root Riki with Rod of Atos or Gleipnir, followed by Dust of Appearance, Ancient Seal and Mystic Flare.
Dark Willow
* 
Smoke Screen prevents Dark Willow from using her abilities, rendering her defenseless and unable to deal any serious damage.
* 
Blink Strike lets Riki jump past Bramble Maze.
Skywrath Mage
* In the early-mid game, Skywrath consistently needs to use his entire mana pool to kill a hero, but Wraith King's 
Reincarnation allows him to finish off Skywrath after the first death, as Skywrath Mage will have likely expended all his mana.
Dark Willow
* Heroes with high burst damage and Black King Bar can take down Dark Willow quickly: 
Phantom Assassin, 
Sven, 
Wraith King
Skywrath Mage
* Skywrath's pitiful defences also make him easy meat to heroes with high burst like 
Juggernaut, 
Lion, or Phantom Assassin, the latter occasionally downing a support Skywrath in a single 
Stifling Dagger.
Dark Willow
* 
Blade Fury dispels most of Dark Willow's abilities, allowing Juggernaut to pass through Bramble Maze and cancel out Cursed Crown before the stun occurs.
* However, Dark Willow can tank 
Omnislash with 
Shadow Realm. As she is a valid target, but invulnerable to right clicks.
Additional:
* None of Dark Willow's spells pierce Spell Immunity, making Blade Fury a good counter against her. Additionally, it dispels 
Cursed Crown and 
Bramble Maze.
* Dark Willow is generally fragile, which results in Omnislash being devastating against her.
* However, if Shadow Realm is activated during Omnislash, then the attack damage is negated (though Omnislash can still jump to other enemies).
Skywrath Mage
* Heroes with silence such as 
Riki, 
Silencer, or 
Night Stalker prevents Skywrath Mage from using his spells.
Dark Willow
* 
Last Word and 
Arcane Curse have the range to hit Dark Willow beyond Bramble Maze.
* 
Global Silence renders Dark Willow useless in teamfights.
Skywrath Mage
* Slow-moving projectiles: 
Skywrath Mage, 
Tinker, 
Necrophos
Additional:
* Skywrath Mage's low health makes him rather easy prey for Nyx Assassin and his lack of armor generally means he'll take the full brunt of a 
Vendetta strike.
* 
Mind Flare turns Skywrath Mage's high intelligence growth against him and deals heavy damage.
* 
Spiked Carapace gives Nyx some degree of protection against Skywrath's spells.
Dark Willow
* Nyx Assassin's high burst damage can be the bane of Dark Willow, as her low health makes it difficult to survive long enough to escape through Shadow Realm.
* Spiked Carapace can be triggered by walking deliberately into Bramble Maze, leaving Dark Willow stunned and defenseless.
Skywrath Mage
* 
Mana Break drains Skywrath Mage of his mana, slowing him and dealing bonus damage while rendering him unable to cast his spells.
* 
Blink makes it incredibly easy for Anti-Mage to close the gap between himself Skywrath Mage to right-click him down. He can also use Blink to get away and escape into fog of war.
* Anti-Mage passively reduces enemy spell damage with 
Counterspell, and can activate the ability to block and send back Skywrath's Ancient Seal or Arcane Bolt, causing him to silence himself or deal massive damage to himself.
* Skywrath Mage's large mana-costs makes him an easy target for 
Mana Void.
* Anti-Mage often builds Black King Bar and 
Manta Style which can dispel Ancient Seal and Concussive Shot.
Dark Willow
* Counterspell negates Dark Willow's high magic burst damage. Its active blocks Cursed Crown.
* Blink allows Anti-Mage to dodge Terrorize during its long cast animation, as well as avoiding the obstacles from Bramble Maze. On the other hand, if Anti-Mage gets caught inside Bramble Maze, he's unable to Blink away.
* Dark Willow's chained magic burst requires a lot of mana, setting her up for damaging Mana Voids.
Skywrath Mage
* Heroes with abilities or items that can silence or disable Anti-Mage for long periods of time will prevent him from Blinking away: Lion, Silencer, 
Shadow Shaman, 
Grimstroke, 
Witch Doctor, Riki, 
Faceless Void, Skywrath Mage, 
Puck.
Dark Willow
* 
Rage protects and dispels all of Dark Willow's abilities.
Additional:
* Rage protects Lifestealer from all of Dark Willow's abilities.
Skywrath Mage
* Outworld Destroyer can steal more mana with 
Astral Imprisonment from Skywrath Mage with 
Shield of the Scion (granted by 
Aghanim's Shard). Shield of the Scion grants Skywrath Mage bonus intelligence every time he deals magic damage to an enemy hero with his abilities. The higher his intelligence, the larger his mana pool. Since Astral Imprisonment steals based on the target's max mana, Outworld Destroyer can steal much more mana from Skywrath Mage.
Skywrath Mage
* Templar Assassin easily withstands all the damage from Skyrwrath Mage, thanks to its first ability 
Refraction. In addition, Templar Assassin can kill Skywrath Mage with a single hit from under the second ability 
Meld.
Additional:
* Templar Assassin easily withstands all the damage from Skyrwrath Mage, thanks to its first ability Refraction. In addition, Templar Assassin can kill Skywrath Mage with a single hit from under the second ability Meld.
Dark Willow
* 
Berserker's Call forces Dark Willow to attack, cancelling Shadow Realm.
Dark Willow
* All of Puck's abilities are area-targeted, and will hit Dark Willow when she uses Shadow Realm.
* 
Illusory Orb allows Puck to bypass Bramble Maze, close the gap and silence Dark Willow with 
Waning Rift.
* 
Phase Shift helps Puck dodge attacks charged by Shadow Realm, and is easily timed against Terrorize's long cast time.
Dark Willow
* 
Gust can hit Dark Willow beyond a defensive Bramble Maze, and before she gets close enough to hit Drow Ranger with Bedlam.
* Drow Ranger's long range allows her to hit Dark Willow's team without venturing into her Bramble Maze.
Skywrath Mage
* Due to the high mana cost of his spells and the low cool down of them, Nether Ward can seriously damage Skywrath Mage if he isn't careful.
* Skywrath Mage's fragility makes him very susceptible to Pugna's high burst damage.
Additional:
* 
Nether Ward will make Skywrath Mage next to useless in fights, as his low hp pool will not allow him to sustain through the damage of the ward should he choose to cast spells. Be wary though that Skywrath's huge burst will make very quick work of Pugna's low hp should the ward be destroyed, and 
Decrepify won't help Pugna at all.
Dark Willow
* 
Quill Spray's constant AoE damage will hit Dark Willow even in Shadow Realm. Its automatic damage will hurt her if she tries to get close and use Bedlam.
Dark Willow
* 
Magnetic Field lets Arc Warden or allies evade Dark Willow's shadow realm attacks. The duration of the evasion can be extended with the clone.
* 
Spark Wraith also exploits Dark Willow's low mobility.
Dark Willow
* 
Rot and 
Meat Hook hits Dark Willow even when she uses Shadow Realm.
* 
Flesh Heap reduces Dark Willow's magic burst damage.
Dark Willow
* 
Flame Guard blocks Dark Willow's magical burst damage, and harms her if she tries to get close to attack with Bedlam.
* 
Sleight of Fist and 
Fire Remnant makes it hard for Dark Willow to fully disable Ember Spirit.
Skywrath Mage
* Once you get a Black King Bar, squishy spellcasters like 
Zeus, Skywrath Mage and others will be probably easy to deal with.
Skywrath Mage
* Fragile heroes: Bounty Hunter has decent nuking capabilities with Shiruken Toss and Jinada thus making fragile heroes easy picks for ganking. Few examples of such heroes are:
Crystal Maiden, 
Pugna, Skywrath Mage, 
Io, Witch Doctor, etc.
Skywrath Mage
* In general, heroes that deal burst in multiple instances will trigger Borrowed Time and heal Abaddon for a large amount, such as Skywrath Mage, 
Techies, Juggernaut, Shadow Shaman, or 
Ogre Magi.
Additional:
* 
Aphotic Shield removes silences, slows and stuns, possibly foiling a full-duration Mystic Flare.
* 
Borrowed Time makes it impossible to burst 
Abaddon down, even healing him up due to Mystic Flare's damage.
Skywrath Mage
* Heroes with silence such as Riki, Silencer, or Night Stalker prevents Skywrath Mage from using his spells.
Skywrath Mage
* Skywrath's pitiful defences also make him easy meat to heroes with high burst like Juggernaut, Lion, or Phantom Assassin, the latter occasionally downing a support Skywrath in a single Stifling Dagger.
Dark Willow
* Heroes who can silence will shut down Dark Willow entirely: 
Death Prophet, Silencer, 
Drow Ranger
Skywrath Mage
* Heroes with a low health pool (Crystal Maiden, Skywrath Mage etc)
Skywrath Mage
* Skywrath Mage also has a terrible time fighting against anything that isn't a hero. His skills are mostly target-based and he has terrible strength and agility, he can easily be kited or harassed by illusion-based heroes like 
Chaos Knight and 
Phantom Lancer, or by Heroes that summon other units like 
Lone Druid, 
Lycan and 
Beastmaster.
Dark Willow
* Heroes with high burst damage and Black King Bar can take down Dark Willow quickly: Phantom Assassin, Sven, Wraith King
Skywrath Mage
* Skywrath Mage also has a terrible time fighting against anything that isn't a hero. His skills are mostly target-based and he has terrible strength and agility, he can easily be kited or harassed by illusion-based heroes like Chaos Knight and Phantom Lancer, or by Heroes that summon other units like Lone Druid, Lycan and Beastmaster.
Skywrath Mage
* Skywrath Mage also has a terrible time fighting against anything that isn't a hero. His skills are mostly target-based and he has terrible strength and agility, he can easily be kited or harassed by illusion-based heroes like Chaos Knight and Phantom Lancer, or by Heroes that summon other units like Lone Druid, Lycan and Beastmaster.
Skywrath Mage
* Skywrath Mage's armor and agility gain is very low, so when Huskar's 
Burning Spears stack they can take him down very quickly at any point of the game.
* 
Berserker's Blood grants bonuses as Huskar uses Burning Spears to harass Skywrath Mage, granting him attack speed, magic resistance, and strength as health regen, making it possible that Huskar can harass Skywrath Mage out of lane and sustain through his magic burst through staying injured throughout lane, or even the game.
* 
Life Break allows Huskar to jump onto Skywrath Mage, closing the distance between them and busting him down so he cannot run. This can be combed with 
Inner Fire, adding a movement speed slow if Aghanim's Shard is applied so Skywrath Mage cannot escape.
Skywrath Mage
* Heroes with high magical burst can easily kill Huskar when he is at low health: Lion, 
Lina, Skywrath Mage
Skywrath Mage
* Skywrath's pitiful defences also make him easy meat to heroes with high burst like Juggernaut, Lion, or Phantom Assassin, the latter occasionally downing a support Skywrath in a single Stifling Dagger.
Dark Willow
* Heroes with high burst damage and Black King Bar can take down Dark Willow quickly: Phantom Assassin, Sven, Wraith King
Skywrath Mage
* While Phantom Assassin can kill Skywrath Mage in a few strikes, Skywrath Mage can also do the same to her if she is not careful.
* 
Arcane Bolt's long range and low cooldowns allows Skywrath Mage to severely harass Phantom Assassin in lane.
* 
Ancient Seal prevents Phantom Assassin from escaping or engaging with 
Phantom Strike.
* 
Mystic Flare's heavy magical damage nukes Phantom Assassin down quickly during the early to mid game.
Additional:
* While Phantom Assassin can kill Skywrath Mage in a few strikes, Skywrath Mage can also do the same to her if she is not careful.
* Arcane Bolt's long range and low cooldowns allows Skywrath Mage to severely harass Phantom Assassin in lane.
* Ancient Seal prevents Phantom Assassin from escaping or engaging with Phantom Strike.
* Mystic Flare's heavy magical damage nukes Phantom Assassin down quickly during the early to mid game.
Skywrath Mage
* Magical burst damage is Timbersaw's weakness, and Ancient Seal not only amplifies it but also prevents him from using 
Timber Chain to escape for up to 6 seconds.
* He generally doesn't build early items to deal with silences.
* 
Reactive Armor does not trigger on magic damage or spells, meaning that even a 
Pipe of Insight won't give him the massive sustain he normally gets from attacks.
Additional:
* Skywrath Mage's long range and low cooldown magic damage spells can easily harass Timbersaw out of lane.
* Ancient Seal is not only a long lasting silence, (one of Timbersaw's biggest weaknesses) but it also makes him even more vulnerable to magical burst damage.
Dark Willow
* Bramble Maze prevents Timbersaw from Timber Chaining away without getting rooted.
* Cursed Crown can still catch Timbersaw if he Timber Chains away.
* Reactive Armor offers little protection against Dark Willow's high magical damage.
Skywrath Mage
* Since Windranger is bad against magical damage, heroes with continuous magical damage or magical nukes can blast her: Zeus, Tinker, 
Leshrac, 
Viper, Skywrath Mage, Lion, Lina, 
Venomancer.
Dark Willow
* 
Windrun does not protect Windranger from Cursed Crown's stun or Dark Willow's magical nukes.
* 
Focus Fire cannot target Dark Willow in Shadow Realm and will be interrupted if targeted earlier, wasting the ultimate.
Additional:
* Windrun does not protect Windranger from Cursed Crown stun or Dark Willow's magical nukes.
* Focus Fire cannot target Dark Willow in Shadow Realm and will be interrupted if targeted earlier, wasting the ultimate.
Skywrath Mage
* Heroes that can easily kill Faceless Void from outside his Cronosphere; 
Sniper, Skywrath Mage, etc.
Dark Willow
* Terrorize forces Faceless Void out of 
Chronosphere.
Skywrath Mage
* Heroes with high magical or pure damage will bypass Bulwark: 
Timbersaw, 
Dark Willow, 
Enigma, 
Invoker, Pugna, Skywrath Mage, Tinker, Zeus, 
Oracle.
Dark Willow
* Heroes with high magical or pure damage will bypass Bulwark: Timbersaw, Dark Willow, Enigma, Invoker, Pugna, Skywrath Mage, Tinker, Zeus, Oracle.
Dark Willow
* Bramble Maze will very likely catch Marci midair, disabling Marci's chasing/fleeing ability.
* Shadow Realm prevents Marci from bursting Willow down since she relies on physical attacks and unit target spells. With 
Aghanim's Scepter, Willow can hit Marci while Marci can't hit Willow.
* 
Bedlam and 
Eul's Scepter of Divinity allows Willow to manfight if Marci initiates with Rebound.
* 
Terrorize and Cursed Crown combo can waste Marci's ultimate for almost half of its duration.
Dark Willow
* Terrorize, Bedlam and Cursed Crown can damage Muerta through 
Pierce the Veil.
* Even if Muerta has Black King Bar and Pierce the Veil active, Dark Willow can still use Shadow Realm to protect herself against the Pierce the Veil's high damage, as Muerta cannot attack her for it's duration.
Dark Willow
* Dark Willow's burst damage and stun prevents Troll Warlord from approaching her until he has Black King Bar.
* Troll Warlord's lack of burst damage makes it hard for him to kill Dark Willow before she slips into Shadow Realm.
Skywrath Mage
* Arcane Bolt can target Terrorblade's low health pool in the laning phase.
* Ancient Seal can prevent Terrorblade from casting Sunder.
* Mystic Flare can be used to great effect to burst Terrorblade down before he gets a Manta Style or a Black King Bar.
Skywrath Mage
* A good Skywrath Mage with quick fingers will punish Queen of Pain for blinking aggressively. Ancient Seal is a six second silence with no cast time, so he can interrupt either her Shadow Strike or Sonic Wave, and a good Mystic Flare on top of that will seal the deal for her.
* Ancient Seal also has pretty good range so he could get it off before she blinks away.
Skywrath Mage
* Ancient Seal's instant cast time will often silence Brewmaster before he can do anything.
* Brewmaster also has no defense against Skywrath Mage's massive magical damage.
Dark Willow
* Bramble Maze stops 
Charge of Darkness in its tracks. Its very long duration means it can be used as an obstacle to block off an incoming Spirit Break during teamfights.
* Shadow Realm and Bedlam can be activated when Dark Willow sees Charge of Darkness coming, preventing Spirit Breaker from using 
Nether Strike after the initial stun.
Dark Willow
* Bramble Maze greatly hinders Bloodseeker's ability to run around in teamfights and pick off dying allies.
* Shadow Realm prevents Bloodseeker from attacking dark Willow, allowing her to safely teleport away.
Skywrath Mage
* Skywrath Mage can easily harass Alchemist in the laning phase with multiple Arcane Bolts. Additionally, if Alchemist is in the process of throwing an 
Unstable Concoction, and has no way to dispel Ancient Seal, the self stun becomes an easy set up for Mystic Flare.
* Caution, however, as a decently farmed Alchemist with {Item ID:Radiance} and {Item ID:Manta Style} can easily send illusions to harass and force Skywrath Mage out.
Skywrath Mage
* Mystic Flare can easily burst down Legion Commander while she is Dueling.
Skywrath Mage
* Arcane Bolt allows Skywrath Mage to harass Earthshaker out of lane.
* Ancient Seal is an instant silence that can be pre-cast onto Earthshaker to disrupt his combo, before he uses 
Blink Dagger to initiate.
* Mystic Flare will nuke Earthshaker down while he stands in place during his long cast animations.
Skywrath Mage
* Skywrath Mage stands perfectly on the center line against Tinker, thanks to his nuke and silence. Also, thanks to his abilities, he can quickly kill a victim, and Tinker is one of the most subtle heroes in the game
Additional:
* Skywrath Mage stands perfectly on the center line against Tinker, thanks to his nuke and silence. Also, thanks to his abilities, he can quickly kill a victim, and Tinker is one of the most subtle heroes in the game
Skywrath Mage
* Arcane Bolt's low cooldown allows him to deal consistent damage to Morphling, and is a viable way to disable Linken's Sphere.
* Ancient Seal prevents Morphling from using any of his skills, giving Skywrath Mage and his team ample time to burst Morphling down.
* Mystic Flare coupled with a stun/root can easily burst Morphling down, especially if he has more stats shifted to Agility.
* Alternatively, Morphling can use Morph to use Skywrath Mage's own silence and nukes against him.
Skywrath Mage
* Skywrath Mage should have the upper hand against Vengeful Spirit with Ancient Seal.
* Vengeful is highly dependant on her abilities and has no natural means to deal against silences.
* Her low attack range allows Skywrath Mage to easily bully her out of the lane.
Skywrath Mage
* 
Cold Embrace is a perfect setup for Mystic Flare.
* Winter Wyvern is a spellcaster, and the 6 second silence from Ancient Seal can prevent her from contributing much.
* Because Skywrath Mage tends to stay back in fights, Winter Wyvern will have to get close to a teamfight to cast 
Winter's Curse on him. And if she chooses to cast it on one of his allies, his low attack speed and damage means that he won't do much.
* However, bear in mind that Skywrath Mage has seriously awful armor, and that can make him an adequate target to being turned against his own team with Winter's Curse, which can result in his death quickly.
Additional:
* Cold Embrace is the perfect setup for Mystic Flare, and his 6-second silence is good against Winter Wyvern in general.
Skywrath Mage
* Heroes with nukes: 
Bane, 
Lich, Lion, Skywrath Mage
Additional:
* 
Untouchable is useless versus constant Arcane Bolts, and it doesn't help that her strength gain is the lowest in the game.
* A jungle Enchantress can weaken lanes and make Skywrath Mage's job easier.
* The magic amplification from Ancient Seal makes her even squishier to Skywrath and his allies' magic nukes.
Skywrath Mage
* Heroes with either magical, physical or pure damage burst: Bane, 
Ember Spirit, Leshrac, Lina, 
Luna, 
Nyx Assassin, Phantom Assassin, Skywrath Mage, Tinker, 
Ursa, 
Void Spirit.
Dark Willow
* Heroes with powerful rooting abilities will disable most of Pangolier's skills, a bonus point if it pierces spell immunity since it will also be able to stop Pangolier during his Rolling Thunder: 
Treant Protector, 
Meepo, Crystal Maiden, Dark Willow, 
Underlord, 
Naga Siren
Dark Willow
* Heroes with strong area-of-effect damaging and/or disabling abilities will be able to intercept Underlord and his team when they exit from Fiend's Gate: Luna's Aghanim's Scepter upgraded 
Eclipse, 
Dawnbreaker's 
Solar Guardian, 
Axe's Berserker's Call, 
Mars's 
Arena of Blood, 
Jakiro's 
Macropyre, 
Dual Breath and 
Ice Path, Naga Siren's 
Song of the Siren, 
Razor's 
Eye of the Storm and 
Plasma Field, Lina's 
Light Strike Array, 
Broodmother's 
Spinner's Snare from Aghanim's Scepter, 
Elder Titan's 
Earth Splitter and 
Echo Stomp, 
Alchemist's Unstable Concoction and 
Acid Spray, 
Queen of Pain's 
Sonic Wave, 
Dark Seer's 
Wall of Replica and 
Vacuum, Venomancer's 
Noxious Plague and 
Poison Nova from Aghanim's Scepter, Oracle's 
Fortune's End and 
Rain of Destiny from Aghanim's Shard, 
Bloodseeker's 
Blood Rite, Enigma's 
Black Hole and 
Midnight Pulse, 
Shadow Fiend's 
Requiem of Souls, 
Batrider's Aghanim's Scepter upgraded 
Flaming Lasso, 
Firefly, 
Flamebreak and 
Sticky Napalm, 
Ancient Apparition's 
Ice Blast, 
Sand King's 
Epicenter, 
Sand Storm and 
Burrowstrike, 
Gyrocopter's 
Call Down, Ember Spirit's Sleight of Fist, Death Prophet's 
Exorcism and 
Silence, 
Monkey King's 
Wukong's Command, Crystal Maiden's 
Freezing Field, 
Muerta's 
The Calling, 
Medusa's 
Stone Gaze, Zeus's 
Nimbus from Aghanim's Scepter. Dark Willow's Bramble Maze, 
Pangolier's 
Swashbuckle, Grimstroke's 
Soulbind, 
Ink Swell and 
Stroke of Fate, 
Earthshaker's 
Echo Slam and 
Fissure, Puck's 
Dream Coil and Waning Rift, 
Winter Wyvern's Winter's Curse, 
Magnus's 
Reverse Polarity.
Skywrath Mage
* Heroes with powerful spammable abilities will prove problematic for Grimstroke as Ink Swell does not protect him from them: Zeus, Skywrath Mage, Tinker, Lina
Skywrath Mage
* Even though 
Linken's Sphere will block your silence, you can cast Arcane Bolt to break it or wait until someone on your team breaks it. In addition, Linken's Sphere builders are usually squishy targets vulnerable to silences: 
Weaver, Queen of Pain, 
Morphling, 
Clinkz, etc. Don't forget that Ancient Seal also increases the magical damage these enemies take, along with silencing them.
Additional:
* Arcane Bolt has a long range and a low cooldown, and is a great spell to waste Linken's Sphere. It also serves as an effective spell to harass Weaver with.
* Ancient Seal prevents Weaver from using Shukuchi or Time Lapse.
Skywrath Mage
* Heroes with long range abilities are also able to touch Zeus, such as 
Clockwerk, 
Kunkka, Puck, Skywrath Mage, 
Spirit Breaker, 
Tusk and others.
Skywrath Mage
* Lich is heavily reliant on his abilities to contribute to team fights, so be wary of enemies that can Silence: Bloodseeker, Death Prophet, Silencer, Drow Ranger, Skywrath Mage.
Skywrath Mage
* Even though Linken's Sphere will block your silence, you can cast Arcane Bolt to break it or wait until someone on your team breaks it. In addition, Linken's Sphere builders are usually squishy targets vulnerable to silences: Weaver, Queen of Pain, Morphling, Clinkz, etc. Don't forget that Ancient Seal also increases the magical damage these enemies take, along with silencing them.
Skywrath Mage
* Silence (and mana burns) will be a persistent problem for Phoenix, as it is heavily reliant on its abilities whether defensively or offensively, so heroes like Death Prophet, Skywrath Mage, and even Nyx Assassin must be closely observed to prevent being shut down by these heroes.
* Hexes are a greater threat to Phoenix as they also disable items, preventing Phoenix from dispelling the debuff on its own.
Skywrath Mage
* Skywrath Mage's Mystic Flare can deal huge damage to Clockwerk inside his Power Cogs.
Skywrath Mage
* Heroes with either magical, physical or pure damage burst: Bane, Ember Spirit, Leshrac, Lina, Luna, Nyx Assassin, Phantom Assassin, Skywrath Mage, Tinker, Ursa, Void Spirit.
Skywrath Mage
* Heroes with silence and mana drain abilites, as Ancient Apparition relies entirely on his abilities: Invoker, Silencer, Nyx Assassin, Skywrath Mage, Shadow Shaman, Lion and etc.
Skywrath Mage
* Skywrath Mage also has a terrible time fighting against anything that isn't a hero. His skills are mostly target-based and he has terrible strength and agility, he can easily be kited or harassed by illusion-based heroes like Chaos Knight and Phantom Lancer, or by Heroes that summon other units like Lone Druid, Lycan and Beastmaster.
Skywrath Mage
* Mystic Flare can be used to effectively ignore the Spirit Bear entirely and burst Lone Druid during the early mid game.
* 
Concussive Shot and Arcane Bolt will provide vision of Lone Druid allowing for better chase in teamfights before the Spirit Bear can do too much damage.
* Ancient Seal denies the ability to transform into 
True Form and receive bonus HP from the skill.
Skywrath Mage
* Skywrath Mage's abilities are single targeted and he can't use Mystic Flare to its fullest potential, since all Meepos spread the damage between them. He also has no disables to prevent Meepo from Poofing to another one (unless he can get Ancient Seal off first).
Dark Willow
* Casting Bramble Maze on top of Meepo guarantees a root, as it is nearly impossible to leave the thorns with all of Meepo's clones.
* Terrorize and Cursed Crown offer great disables against the grouped Meepos and can prevent them from using 
Poof to escape.
Skywrath Mage
* Skywrath Mage's very low health allows Monkey King to ambush and finish him off quickly.
Dark Willow
* Terrorize forces Monkey King out of Wukong's Command.
Dark Willow
* 
Ball Lightning allows Storm Spirit to bypass Bramble Maze into the backline, and zip back into battle if he gets hit by Terrorize.
Skywrath Mage
* Similar to Timbersaw, Storm Spirit builds items that don't help against silences.
* An 
Orchid Malevolence will most likely silence you first. However, if you grab a Eul's Scepter of Divinity, you might dispel his silence and turn the tides to your favor.
* Root and silence are 
Storm Spirit's ultimate counters. Skywrath Mage has a silence in his kit, and has 
Rod of Atos as his core item. If he dispels one, you cast the other, both leaving him vulnerable.
* If he builds Black King Bar, he spends 4050 gold that doesn't help him snowball effectively.
Dark Willow
* Jakiro's area of effect abilities can hit Dark Willow even while she is hidden during the Shadow Realm.
* Waiting about 2 seconds after Dark Willow casts Shadow Realm to cast Ice Path will stun her while her Shadow Realm is at it's maximum damage.
* Jakiro can stun Dark Willow when there is about 1 second left on Cursed Crown, Jakiro's Ice Path stun lasts slightly longer then Cursed Crown.
Skywrath Mage
* Ancient Seal can silence Jakiro and make him vulnerable to magical spells up to 6 seconds.
* Skywrath Mage can usually burst down Jakiro with his high damage magical spells.
Skywrath Mage
* Fate Edict can completely negate Skywrath Mage's heavy magic damage.
Ancient Seal.
* Fortune End dispels
Dark Willow
*
Fortune's End not being disjointable is almost an ensured disable if Dark Willow tries to escape with Shadow Realm. Dispels Cursed Crown and Terrorize.
Fate's Edict negates all her magic damage in case she catches a single hero.
False Promise's strong dispel removes Dark Willow's disables.
Cursed Crown before it times out and stuns. He can also save a stunned ally with False Promise.
Bedlam's over-time damage, since the spell provides no form of control. Similarly, he can also negate the magic burst from 
Shadow Realm.
Terrorize, and it can remove the root from 
Bramble Maze if cast quick enough. Be mindful that Fortune's End only dispels your allies' debuffs on the primary target.
*
*
Additional:
* Fortune's End can easily dispel
* Fate's Edict can easily negate
* Fortune's End can dispel the fear effect from